Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKEKLFYTIGEVAEELHLEQHVLRFWESQFRQIKPI-KR-KGRRLYDHKCIEVIKKIKYMLYDKGYTIKGVQKEFDNNIKSSCNFGNLLPQLIDLRDYLINKINSEKSNEQL
3GP4 Chain:A ((2-99))
------SLNIKEASEKSGVSADTIRYYERI-GLIPPIHRNESGVRKFGAEDLRWILFTRQ-MRRAGLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDR
General information:
TITO was launched using:
RESULT:
Template:
3GP4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37975 for 620 contacts (-61.2/contact) +
2D Compatibility (PS) -9872 + (NN) -980 + (LL) 876
1D Compatibility (HY) -1600 + (ID) 900
Total energy: -50451.0 ( -81.37 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_3GP4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GP4-query.scw
PDB file :
Tito_Scwrl_3GP4.pdb
: