Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLPATPDNSTAVAIIPIAAILGIIPIATSVAPIAPNNNAKPIVHPPEKVLEGCCFCEEIMLVYYKTVARCFVFCANYYYFHHLQTFFEMELYYL
2LQX Chain:A ((1-41))
------------------------------------------SEKPQQELEECQNVCRMKRWSTEMVHRCEKKCEEKFERQQR-----------
General information:
TITO was launched using:
RESULT:
Template:
2LQX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16378 for 197 contacts (-83.1/contact) +
2D Compatibility (PS) -3938 + (NN) 1008 + (LL) 4080
1D Compatibility (HY) 2400 + (ID) 400
Total energy: -13228.0 ( -67.15 by residue)
QMean score : 0.111
(partial model without unconserved sides chains):
PDB file :
Tito_2LQX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LQX-query.scw
PDB file :
Tito_Scwrl_2LQX.pdb
: