Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNINIKNLVHAFSKLPSLGPSSSRRLVIHLLQNKEKVMLPLASSIKELADLIIECKVCGNLDTQSPCSICTNPKRDTKLMCVVEELGDLWAFEKGSIYSGMYHVLGGRLSAINGIGPEKLNLDNIPKRVTEFKIEEVIIAINPTLEGQVTVQYIIESLKNLDVKVSRLACGIPMGGEIDYLDEGTLKAALTSRQEYESNIK
2V1C Chain:B ((6-194))
---SLVSLIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLASALLEAKRDLHVCPICFNITDAEKCDVCADPSRDQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGM--EVILATGTTVEGDATALYLQRLLEPLGAAISRIAYGVPVGGSLEYTDEVTLGRALTGRQTVSKPQ-
General information:
TITO was launched using:
RESULT:
Template:
2V1C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100645 for 1224 contacts (-82.2/contact) +
2D Compatibility (PS) -20324 + (NN) -9943 + (LL) 744
1D Compatibility (HY) -16400 + (ID) 3850
Total energy: -150418.0 ( -122.89 by residue)
QMean score : 0.420
(partial model without unconserved sides chains):
PDB file :
Tito_2V1C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2V1C-query.scw
PDB file :
Tito_Scwrl_2V1C.pdb
: