Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNWKLTKTLFIFVFILVNIVLVSIYVNKVNRSHINEVESNNEVNF-QQEEIKVPASILNKSVKGIKLEQITGRSKDFSSKA----KGDSDL-T-TSDGGKLLN-A-NISQSVKVS-DNNLKDLKDYVNKRVFKGSEYQLSEI--NSGSVKYEQTYDNFPILNNSK------AMLNFNIE-DNKAASYKQSMMDDIKPTDGADKKHQVIGVR-KAIEALYYNRYLKKGDEVINARLGYYSVVNETNVQLLQPNWEIKVKHDGKDKTNTYYVEATNNNPKIINH |
2O3O Chain:A ((8-252)) | --------------------------------KEYEVIKNDVEHDMKADHITYE----GLNKEATEGYRITANQKSFSKEEIEALKDQKPLMDMPSDDHKVTSLKMKFANPIALSKKDIEDDAQALVSSKIQDGEKYKLWKVDKSKKEIIFFQTYEGHYIYQKTDNPSNMIGQVVLHLNGKNEVVSYDQTTLET-----FKQIQKESLITEMDAVELLYYQNQLKEYSTVKSCKFGYVAQYPLTSTQVLAPVWRITVEYEKEKKTVQEYFTVNALESTILDT |
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General information:
TITO was launched using:
| RESULT:
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Template: 2O3O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 4983 for 1485 contacts (3.4/contact) +
2D Compatibility (PS) -23716 + (NN) -4872 + (LL) 4144
1D Compatibility (HY) -10400 + (ID) 2450
Total energy: -32311.0 ( -21.76 by residue)
QMean score : 0.372
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