Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTVYGHRGLPSKAPENTIASFKAASEVEGINWLELDVAITKDEQLIIIHDDYLERTTNMSGEITELNYDEIKDASAGSWFGEKFKDEHLPTFDDVVKIANEYNMNLNVELKGITGPNGLALSKSMVKQVEEQLTNLNQNQEVLISSFNVVLVKLAEEIMPQYNRAVIFHTTSFREDWRTLLDYCNAKIVNTEDAKLTKAKVKMVKEAGYELNVWTVNKPARANQLANWGVDGIFTDNADKMVHLSQ
2PZ0 Chain:B ((14-249))
---VIAHRGDSKNVPENTIAAFKRAMEL-GADGIELDVQLTKDGHLVVIHDETVDRTTNGEGFVKDFTLEEIKKLDAGIKFGEKFAGERIPTLYEVFELIGDKDFLVNIEIK-----SGIVLYPGIEEKLIKAIKEYNFEERVIISSFNHYSLRDVKKMAPHLKIGLLYQ-CGLVEPWHMAL-RMEAYSLHPFYFNIIPELVEGCKKNGVKLFPWTVDRKEDMERMIKAGVDGIITDDPETLINLVR
General information:
TITO was launched using:
RESULT:
Template:
2PZ0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87218 for 2033 contacts (-42.9/contact) +
2D Compatibility (PS) -25713 + (NN) -11631 + (LL) 288
1D Compatibility (HY) -18800 + (ID) 3850
Total energy: -146924.0 ( -72.27 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_2PZ0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PZ0-query.scw
PDB file :
Tito_Scwrl_2PZ0.pdb
: