Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | -----------------------------------------------------------------------------------------------------------------------------------MFNKYYTKEEVVISTLQTLASKFEDLDIDSHDNLNSFKARIGSTIDKLAKAPPLNKYTF--TELMIIISIIYFKNLYIGRLDKPSSRKKKGGNL-IFEIVYNNQMLNSSTAKL-------------------------------------------------------------------------------------------- |
1IU4 Chain:A ((1-331)) | DSDDRVTPPAEPLDRMPDPYRPSYGRAETVVNNYIRKWQQVYSHRDGRKQQMTEEQREWLSYGCVGVTWVNSGQYPTNRLAFASFDEDRFKNELKNGRPRSGETRAEFEGRVAKESFDEEKGFQRAREVASVMNRALENAHDESAYLDNLKKELAN----GNDALRNEDAR-SPFYSALRNTPSFKERNGGNHDPSRMKAVIYSKHFWSGQDRSSSADKRKYGDPDAFRPAPGTGLVDMSRDRNIPRSPTSPGEGFVNFDYGWFGAQTEADADKTVWTHGNHYHAPNGSLGAMHVYESKFRNWSEGYSDFDRGAYVITFIPKSWNTAPDKVKQGWP |
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General information:
TITO was launched using:
| RESULT:
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Template: 1IU4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -19590 for 617 contacts (-31.8/contact) +
2D Compatibility (PS) -10955 + (NN) -3939 + (LL) 432
1D Compatibility (HY) 400 + (ID) 950
Total energy: -34602.0 ( -56.08 by residue)
QMean score : 0.311
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