Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAFKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEG-TELEHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNS--EEKGGVIDDIKAQWGTLDEFKNEFANKATTLFGSGWTWLVVNDGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMTAFWNIVNWKKVDELYQAAK
2RCV Chain:D ((2-201))
-AYELPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGN---ANKSVEELVADLDSVPENIRTAVRNNGGGHANHKLFWTLLSPNGGGEPTGALAEEINSVFGSFDKFKEQFAAAAAGRFGSGWAWLVVNNGKLEITSTPNQDSPLSEGKTPILGLDVWEHAYYLNYQNRRPDYISAFWNVVNWDEVARLYSER-
General information:
TITO was launched using:
RESULT:
Template:
2RCV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70936 for 1551 contacts (-45.7/contact) +
2D Compatibility (PS) -20166 + (NN) -2709 + (LL) 604
1D Compatibility (HY) -20800 + (ID) 6100
Total energy: -120107.0 ( -77.44 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_2RCV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RCV-query.scw
PDB file :
Tito_Scwrl_2RCV.pdb
: