Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEKLKLMTIVGTRPEIIRLSSTIKACDQY--FNQILVHTGQNYDYTLNQIFFDDLELRQPDHYLEAVG--SNLGETMGNIIAKTYDVLLREQPDALLILGDTNSCLA-AVSAKRLKIPVFHMEAGNRCFDQ--NVPEEINRKIVDHVSDVNLPYTEHSRRYLLDEGFNKANIFVTGSPMTEVIEAHRDKI-NHSDVLN----KLG-LEPQQYILVSAHRE--ENIDNEKNFKSLMNAINDIAKKY-KMPVIYSTHPRSWKKIEE--SK-FEFDPLVKQLKPFGFFDYNALQKDAFVVLSDSGTLSEESSILKFPGVL-IRTSTERPEVLDKGTVI-VGGITYNNLIQSVELAREMQNN-NEPMIDAIDYKDTNVSTKVVKIIQSYKDIINRNTWRK |
| 1VGV Chain:A ((1-375)) | ---MKVLTVFGTRPEAIKMAPLVHALAKDPFFEAKVCVTAQHREM-LDQ-VLKLFSIV-PDYDLNIMQPGQGLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQNLLRENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESF---GRGFEEICHALADIATTHQDIQIVY-PVHLNP-NVREPVNRILGHVKNVILIDPQEYLPFVWLMNHAWLILTDSGGIQEEAPSLGKPVLVMRDT-TERPEAVTAG-TVRLVGTDKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQACSRILEALKNNRIS-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VGV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -147538 for 2918 contacts (-50.6/contact) +
2D Compatibility (PS) -37646 + (NN) -9034 + (LL) 1376
1D Compatibility (HY) -18400 + (ID) 4500
Total energy: -215742.0 ( -73.93 by residue)
QMean score : 0.453
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