Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MCLNFREDNVMKKIMVIFGTRPEAIKMAPLVKEIDHNGNFEANIVITAQHRDMLDSVLSIFDIQADHDLNIMQDQQTLADLTANALAKLDSIINEEQPDMILVHGDTTTTFVGSLAAFYHQIPVGHVEAGLRTHQKYSPFPEELNRVMVSNIAELNFAPTVIAAKNLLFENKDKERIFITGN-TVIDALSTTVQNDFVSTIINKHKGKKVILLTAHRRENIGEPMHQIFKAVRDLADEYKDVVFIYPMHRNPK-VRAIAE-KYLSGRNRIELIEPLDAIEFHNFTNQSYLVLTDSGGIQEEAPTFGKPVLVL-RNHTERPEGVEAGTSRVIGTDYDNIVRNVKQLIEDDEAYQRMSQANNPYGDGQASRRICEAIEYYFGLRSDKPDEFVPLRHK |
| 1V4V Chain:A ((4-369)) | ---------GMKRVVLAFGTRPEATKMAPVYLALRGIPGLKPLVLLTGQHREQLRQALSLFGIQEDRNLDVMQERQALPDLAARILPQAARALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLRSGNLKEPFPEEANRRLTDVLTDLDFAPTPLAKANLLKEGKREEGILVTGQTGVDAVLLAAKLGR----LPEGLPEGPYVTVTMHRREN-WPLLSDLAQALKRVAEAFPHLTFV-YPVHLNPVVREAVFPVLKG-VRNFVLLDPLEYGSMAALMRASLLLVTDSGGLQEEGAALGVPVVVLRN-VTERPEGLKAGILKLAGTDPEGVYRVVKGLLENPEELSRMRKAKNPYGDGKAGLMVARGVAWRLGLGP------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1V4V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -198722 for 3132 contacts (-63.4/contact) +
2D Compatibility (PS) -39462 + (NN) -17480 + (LL) 1376
1D Compatibility (HY) -26800 + (ID) 7000
Total energy: -288088.0 ( -91.98 by residue)
QMean score : 0.445
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