Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MWSFKSMFNTPEDPEKDAYEFYGKVQPGITTPTQKTCNFVALDLKS-KDRDAIKAMFKKWTVMADRMMDGDTVGKTSNNPLMPPVDTGESIGLGASKLTITFGISKSLMKKIGLSSKIPDAFKDLPHFPNDQLIDDYSDGDIMIQACSNDSQVSFHAVHNLVRPFRDIVKVRWAQSGFISAKGKE----TPRNLMAFKDGTINPRKSNQLKD-YVFIDD-GWAKHGTYCVVRRIQIHIETWDRTALEEQEATFGRKRHSGAPLTGGK---EFDEIDLKAKDSHGEYIIDKDAHTRLAK---EANTSILRRAFNYVDGTDDRTGNFETGLLFIAFQK-ATKQFIDIQNNLGSNDKLNEYITHRGSASFLVLPGVSKGGYLGETLFD |
4GT2 Chain:G ((102-464)) | --------------------FHGKHQPGITTPMQARGHLVAFDLAAGAGRKEAAALLRRWSDTARRLMAGEPAGSR---------DTDVARDAGPSSLTVTFGFGHSFFGRTGLEEQRPVALDPLPDFSSDHLDKNRSNGDLWVQIGADDALVAFHALRAIQRDAGAAARVRWQMNGFNRSPGATAHPMTARNLMGQVDGTRNPKPGEADFDRRIFVPEPAWMANGSYVVVRRIRMLLDDWEELSLKAQEDVIGRRKSDGAPLSGGSGATESTEMDLEKTDGSGELVVPINAHARITRPDQNGGAAMVRRPFSYHDGFDA-DGVPDAGLLFVCWQADPLRGFVPVQRKLDRGDALSQFIRHEASGLFAVPGGAAEGEYVGQRLLE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GT2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -111407 for 2863 contacts (-38.9/contact) +
2D Compatibility (PS) -36643 + (NN) -16132 + (LL) 1064
1D Compatibility (HY) -19200 + (ID) 6400
Total energy: -188718.0 ( -65.92 by residue)
QMean score : 0.480
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