Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSPVTTSRYQGGAHRG------------------------------------ |
| 4Q3K Chain:A ((20-260)) | QGMNISKITINQHVGVTLTCYVQDVSQEMSNMSKRPAMLIFPGGGYQFCSDREAEPIALSYLAKGYNAFVLRYSVKEHAVFPRPLIDAEDALSYLKDNAHALHINPDKIAVIGFSAGGHLATTLATEGKVRPNAVVLGYPALIRHEKYWNFPTPKVDQQTPEMFVFHTFEDDLVPLSHPLYIVEELSKANIPVEFHLFKSGVHGLSLGNKIVSNGLDKMIEDDVQVWFDLSCRWLDKVLDL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q3K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -52 for 34 contacts (-1.5/contact) +
2D Compatibility (PS) -1807 + (NN) -1073 + (LL) 0
1D Compatibility (HY) -400 + (ID) 200
Total energy: -3532.0 ( -103.88 by residue)
QMean score : 1.104
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