Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNDIYFMTLAIEEAKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRANKKSTN
1WWR Chain:D ((25-169))
-----YFLKVALREAKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEYYPLEEA-SELLSEFFKKLRNN-----
General information:
TITO was launched using:
RESULT:
Template:
1WWR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94172 for 1233 contacts (-76.4/contact) +
2D Compatibility (PS) -16056 + (NN) -9562 + (LL) 436
1D Compatibility (HY) -14800 + (ID) 3700
Total energy: -137854.0 ( -111.80 by residue)
QMean score : 0.602
(partial model without unconserved sides chains):
PDB file :
Tito_1WWR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WWR-query.scw
PDB file :
Tito_Scwrl_1WWR.pdb
: