Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKFSDYQLILDELKMTLSHVEADEFSTFASKILHAEHIFVAGKGRSGFVANSFAMRLNQLGKQAHVVGESTTPAIKSNDVFVIISGSGSTEHLRLLADKAKSVGADIVLITTNKDSAIGNLAGTNIVLPAGTKYDEQG----SAQPLGSLFEQASQLFLDSVVMGLMTEMNVTEQTMQQNHANLE
1VIM Chain:A ((15-196))
---LRFLEVVSEHIKNLRNHIDLETVGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETVTPRITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVVKGKMKQ-ERDEILSQLAPLGTMFELTAMIFLDALVAEIMMQKHLTEKDLEARHAVLE
General information:
TITO was launched using:
RESULT:
Template:
1VIM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93774 for 1399 contacts (-67.0/contact) +
2D Compatibility (PS) -19476 + (NN) -12858 + (LL) 340
1D Compatibility (HY) -15600 + (ID) 3200
Total energy: -144568.0 ( -103.34 by residue)
QMean score : 0.714
(partial model without unconserved sides chains):
PDB file :
Tito_1VIM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VIM-query.scw
PDB file :
Tito_Scwrl_1VIM.pdb
: