Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
3QWD Chain:C ((3-195))
--LIPTVIE------RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLG---GQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
General information:
TITO was launched using:
RESULT:
Template:
3QWD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126622 for 1440 contacts (-87.9/contact) +
2D Compatibility (PS) -20095 + (NN) -8466 + (LL) 276
1D Compatibility (HY) -25600 + (ID) 9200
Total energy: -189707.0 ( -131.74 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_3QWD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QWD-query.scw
PDB file :
Tito_Scwrl_3QWD.pdb
: