Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFFFATSCLVLTLVVVSSLSSSANASQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENANKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
2SNM Chain:A ((7-141))
-------------------------------------------------------------------------------------LHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMKENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQHLRKSEAQAKKEKLNIWS--------
General information:
TITO was launched using:
RESULT:
Template:
2SNM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47966 for 1114 contacts (-43.1/contact) +
2D Compatibility (PS) -14277 + (NN) -2031 + (LL) 5968
1D Compatibility (HY) -14800 + (ID) 6600
Total energy: -79706.0 ( -71.55 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_2SNM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2SNM-query.scw
PDB file :
Tito_Scwrl_2SNM.pdb
: