Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRLQKAPLVTSGLVLGLLGLGNLLKDLSLTLNA-----VCGIFAFLIWIHLLCTMIKY------FNNVKEQLNSPLVSSVFTTFFMSGFLGTTYLNTF-FSNITFINSLITPIWILCLVGIMT-------HM------IIFSIKYLKDFSL------ENVYPSWTVLFIGIA--IAGLTAPVSGCFFIGQLTVIYGFVATCIVLPIVFKRL----------------KAFPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLILAQIFYFYIIIQLPKLLKEPFSPVFSAFTFPLVISATALKNSLPVLMFPDIWKGLLFIEVLLATVIVLRVF-----------IGYLHFFLKKENQDKFLRNASQ |
| 3GPD Chain:R ((1-334)) | ----------GKVKVGVDGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAE--------DGKLVIDGKAITIFQE-RDPENIKWGDAGTA--YVVESTGVFTTMEKAGAHLKGGAKRIVISAPSADAP-MFVMGVNHFKYANS-LKIISNASCTTNCLAPLAKVIHDH-FGIVEGLMTTVHAITATQKTVDSPSGKLWRGGRGAAQNLIPASTGAAKAVGKVIPELDGKLTGMAFRVPTANVSVLDLTCRLEKPAKYDDIKKVVKEASEGPLKGILGYTEDEVVSD-DFNGSNHSSIF-DAGAGIEL----NDTFVKLVSWYDNEFGYSERVVDLMAHMASKE----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GPD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -415846 for 2144 contacts (-194.0/contact) +
2D Compatibility (PS) -28468 + (NN) -112 + (LL) 2788
1D Compatibility (HY) -4800 + (ID) 2300
Total energy: -448738.0 ( -209.30 by residue)
QMean score : 0.138
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