Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGMVLKPEPVFNAMEDLDVTEQTR--VILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYTRPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNEDKQILERYKIGLKKG
4YVJ Chain:B ((21-258))
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLGKQASAEEDSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLK---------
General information:
TITO was launched using:
RESULT:
Template:
4YVJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121405 for 1693 contacts (-71.7/contact) +
2D Compatibility (PS) -25600 + (NN) -10429 + (LL) 420
1D Compatibility (HY) -23600 + (ID) 5350
Total energy: -185964.0 ( -109.84 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_4YVJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YVJ-query.scw
PDB file :
Tito_Scwrl_4YVJ.pdb
: