Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTNLPMNKLIDEVNNELSVAINKSVMDTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGVKSAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAV-MSAADIANVDDATKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQIDEQFNTKHLLEIVDLFYSRDH |
| 4F62 Chain:B ((32-292)) | ----------------------------QLHNAMRYSLF-GGKRIRPMLTYASAQLVGDISSLTDASAAALESIHAYSLIHDDLPAM---------------FDEATAILAGDALQTFAFELLSNPTSAQPELAIKLIQELVVASGRNGMITGQMIDLSSEN--ISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDL------------------KATYPKLLGLDGAKALVVRLHEQAIAQISEFGDK--SQPLTDLANYIID--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4F62.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -101926 for 1810 contacts (-56.3/contact) +
2D Compatibility (PS) -24518 + (NN) -13334 + (LL) 2864
1D Compatibility (HY) -17600 + (ID) 4900
Total energy: -159414.0 ( -88.07 by residue)
QMean score : 0.540
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