Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIGIIGAMEEEVTILKNKLTQLSEISVAHVKFYTGILKDREVVITQSGIGKVNAAISTTLLINKFKPDVIINTGSAGALDESLNVGDVLISDDVKYHDADATAFGYEYGQIPQMPVAFQSSKPLIEKVSQVVQQQQLTAKV-GLIVSGDSFIGSVEQRQKIKKAFPNAMAVEMEATAIAQTCYQFNVPFVVVRAVSDLANGEAEMSFEAFLEKAAVSSSQTVEALVSQL
4WKB Chain:B ((3-230))
-IGIIGAMQQEVAILKDLIEDVQEVNQAGCTFYSGQIQGVDVVLLQSGIGKVSAALGTALLISQYAPDVVINTGSAGGFDASLNVGDVVISSEVRHHDADVTAFGYEIGQMAGQPAAFKADEKLMTVAEQALAQLPNTHAVRGLICTGDAFVCTAERQQFIRQHFPSVVAVEMEASAIAQTCHQFKVPFVVVRAISDVADKESPLSFEEFLPLAAKSSSAMVLKMVELL
General information:
TITO was launched using:
RESULT:
Template:
4WKB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114217 for 2028 contacts (-56.3/contact) +
2D Compatibility (PS) -24667 + (NN) -10575 + (LL) 208
1D Compatibility (HY) -24000 + (ID) 6150
Total energy: -179401.0 ( -88.46 by residue)
QMean score : 0.607
(partial model without unconserved sides chains):
PDB file :
Tito_4WKB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WKB-query.scw
PDB file :
Tito_Scwrl_4WKB.pdb
: