Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MITFENIQQ-LEKYTLMTMHGL------------FNQLKLGIISID---NAEHTLFTPYMME----SLSSLGVKPDIID-------LIHKGTELED-----FAAFNL-SIEDTVTVCLQRTEELLNQYKNVEFN---------DKILINWRIIQE--------
4CT3 Chain:A ((2-165))
AKTQAEINKRLDAYAKGTVDSPYRVKKATSYDPSFGVMEAGAIDADGYYHAQQDLITDYVLWLTDNKVRTWGNAKDQIKQSYGTGFKIHENKPSTVPKKGWIAVFTSGSYEQWGHIGIVYDGGNTSTFTILEQNWNGYANKKPTKRVDNYYGLTHFIEIPVKA
General information:
TITO was launched using:
RESULT:
Template:
4CT3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32485 for 749 contacts (-43.4/contact) +
2D Compatibility (PS) -11500 + (NN) 3012 + (LL) 0
1D Compatibility (HY) -1600 + (ID) 1300
Total energy: -43873.0 ( -58.58 by residue)
QMean score : 0.143
(partial model without unconserved sides chains):
PDB file :
Tito_4CT3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CT3-query.scw
PDB file :
Tito_Scwrl_4CT3.pdb
: