Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLYTSYGTYGFLHQIKINNPTHQLFQFSASDTSVIFEETDGETVLKSPSIYEVIKEIGEFSEHHFYCAIFIPSTEDHAYQLEKKLISVDDNFRNFGGFKSYRLLRPAKGTTYKIYFGFADRHAYEDFKQSDAFNDHFSKDALSHYFGSSGQHSSYFERYLYPIKE
1Y0H Chain:A ((4-95))
----------------------------------------------------------------SPVAVIARFMPRPDARSALRALLDAMITPTRAEDGCRSYDLYESADGGELVLFERYRSRIALDEHRGSPHYLNYRAQV------GELLTRPVAVTVLA-----
General information:
TITO was launched using:
RESULT:
Template:
1Y0H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33623 for 619 contacts (-54.3/contact) +
2D Compatibility (PS) -10183 + (NN) -5757 + (LL) 5100
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -47563.0 ( -76.84 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_1Y0H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y0H-query.scw
PDB file :
Tito_Scwrl_1Y0H.pdb
: