Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAVKHASAPKAYINITGLGFAKLTKEGAELKYSDITKTRGLQKIGVETGGELKTAYADGGPIESGNTDGEGKISLQMHAFPKEIRKIVFNEDYDEDGVYEEKQGKQNNYVAVWFRQERRDGTFRTVLLPKVMFTN-PKIDGETAEKDWDFSSEEVEGEALFPLVDNKKSVRKYIFDSANMTNHDGDGEKGEEAFLKKILGEEYTGNVTEGNEETL |
1YTF Chain:C ((34-79)) | ---------------------------------------------------------------------------------------------------------ENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQKAQVEAEWV---------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YTF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -2369 for 223 contacts (-10.6/contact) +
2D Compatibility (PS) -4870 + (NN) -220 + (LL) 8504
1D Compatibility (HY) -2000 + (ID) 300
Total energy: -1255.0 ( -5.63 by residue)
QMean score : 0.103
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