Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
1JI5 Chain:B ((2-142))
------VIEVLNKQVADWSVLFTKLHNFHWYVKGPQFFTLHEKFEELYTESATHIDEIAERILAIGGKPVATMKEYLEISSIQEAAYGETAEGMVEAIMKDYEMMLVELKKGMEIAQNSDDEMTSDLLLGIYTELEKHAWMLRAFLN
General information:
TITO was launched using:
RESULT:
Template:
1JI5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42819 for 1078 contacts (-39.7/contact) +
2D Compatibility (PS) -15288 + (NN) -8155 + (LL) 264
1D Compatibility (HY) -17200 + (ID) 3650
Total energy: -86848.0 ( -80.56 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_1JI5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JI5-query.scw
PDB file :
Tito_Scwrl_1JI5.pdb
: