Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLKSFVTATLALGLLSTVGAALPSHEASADSNNGYKELTMDGKHTVPYTISVDG-ITALHRTYFVFPENKKVLYQEIDSKVKNELASQRGVTTEKINNAQTATYTLTLNDGNKKVVNLKKN---DDAKNSIDPSTIKQIQIVVK
2Z8L Chain:A ((110-208))
-------------------------------------------LNAPKFVIKKEVDAGVYTHVKRHYIYKEEVSLKELDFKLRQYLIQNFDLYKKF---PKDSKIKVIMKDGGYYTFELNKKLQPHRMSDVIDGRNIEKMEANIR
General information:
TITO was launched using:
RESULT:
Template:
2Z8L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20216 for 632 contacts (-32.0/contact) +
2D Compatibility (PS) -10412 + (NN) -2802 + (LL) 2536
1D Compatibility (HY) -3600 + (ID) 650
Total energy: -35144.0 ( -55.61 by residue)
QMean score : 0.562
(partial model without unconserved sides chains):
PDB file :
Tito_2Z8L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Z8L-query.scw
PDB file :
Tito_Scwrl_2Z8L.pdb
: