Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTKKVYFNHDGGVDDLVSLFLLLQ-MENVQLIGVSTIGADCYLEPSLSASVKIINRFSNED----IQVAPSYERGKNPFPKEWRMHAFFMDALPILNEP--------VKHVASNVSDKEAFEDIIQTLKRQSEKVTLLFTGPLTDLAKALQK-DSSIVQYIEKLVWMGGTFLPKGNVEEPEHDGSAEWNAYWDPEAVKIVFDS-DIEIDMVALESTNQVPLTLDVRQRWANERQYTGIDFLGVSYAAVPPLTHFITNSTYFLWDVLTTAYIGNKDLVHSIEKKVDVISYGPSQGKTFECKDGRKINVINHVDNNAFFDYITALAKKVN |
2FF2 Chain:B ((15-280)) | --KNVVLDHDGNLDDFVAMVLLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCLMHNNMNLPLFPIGKSAATAVNPFPKEWRCLAKNMDDMPILNIPENVELWDKIKAENEKYEGQQLLADLVMN---SEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAVDVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPVRSPYVQRFGEQTNFLLSILVGTMWAMCTHCELLRDGDGYYAWDALTAAYV--------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2FF2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -135897 for 2229 contacts (-61.0/contact) +
2D Compatibility (PS) -26250 + (NN) -8823 + (LL) 3552
1D Compatibility (HY) -21600 + (ID) 4550
Total energy: -193568.0 ( -86.84 by residue)
QMean score : 0.461
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