Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQQWIPVYKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTDDLEVI-DKYYL
5PGM Chain:E ((1-228))
-PKLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAIQTANIALEKADRLWIPVNRSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRLLPYWQDVIAKDLLSGKTVMIAAHGNSLRGLVKHLEGISDADIAKLNIPTGIPLVFELDENLKPSKPSYYL
General information:
TITO was launched using:
RESULT:
Template:
5PGM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83429 for 1902 contacts (-43.9/contact) +
2D Compatibility (PS) -23945 + (NN) -4242 + (LL) 208
1D Compatibility (HY) -18400 + (ID) 5700
Total energy: -135508.0 ( -71.25 by residue)
QMean score : 0.420
(partial model without unconserved sides chains):
PDB file :
Tito_5PGM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5PGM-query.scw
PDB file :
Tito_Scwrl_5PGM.pdb
: