Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIRHIRNATAVIEYGGKRILIDPMLSDKGSFDPFPNSPRQDQKNPLVELPMAIEDIINDIDLVILTHLHIDHFDPKAIEVLPKDIKIYAQNEEDASEVERYGFTNVSVFNDVTHIGEIELIKTDAQHGHGEIL------KMTGHVHGMILKHSEEPTLYLAADTVWFEGVEKALKTYQPDVVVLNGGANQFFE-GGPLVMDEHDVLKVANTLPLAQIVVVHMEAVNHWHLSRKELNEFINSNDLGNRVVVPNDGELLTFEK
3RPC Chain:A ((5-264))
TQYTHIRNATGKLTIKNTTFLIDPFLAPKDTYPGFEGTFNYQQRMPMVDLPLSMDDLLSNVTAVVVTHTHLDHWDDTAINSIPKSLPIFVQNTADKELITSQGFIDVRIIFESLEFNGITLRKTGGSHGTVEMYANPVLAPLAGDAMGVIFEAADEPTVYLVGDTVWTSDVEKALLRFDPNVIIMNTGYAQILGFEDSIIMGTKDIGRMVVRKPEAKIIAVHMDTVNHTATSRKDVRKFIKGNNIESHVAVPEDGETITL--
General information:
TITO was launched using:
RESULT:
Template:
3RPC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -183822 for 2186 contacts (-84.1/contact) +
2D Compatibility (PS) -27732 + (NN) -16423 + (LL) 168
1D Compatibility (HY) -22800 + (ID) 4500
Total energy: -255109.0 ( -116.70 by residue)
QMean score : 0.663
(partial model without unconserved sides chains):
PDB file :
Tito_3RPC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RPC-query.scw
PDB file :
Tito_Scwrl_3RPC.pdb
: