Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKIFVLLMSVILGISLTGCIGYRMDLEHFNTLYYEESPKKAYEYSKQFTKKK-KNALLWDLQNGLSALYARDYKTSLGVLDQAEQRFDKTQSAFTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAIKEIDSSKKHNINMERSRAEVSEILNNTYSNLDKYEAYQGLLNPAVSYLSGLFYALNGDKNKGLGYLNEAYGI-SQSPFVAQDLVFFKNPNRSHFTWIIIEDGKEPQKSEFKIDVPIFMIDSVYNVSVALPKLEKGEAFYQNFTLKDGEKVTPFDTLASIDAVVASEFRKQLPYIITRAILSATFKVGMQAVANYYLGFVGGLVTSLYSGVSTFADTRNTSIFAHKIYLMRIKNKAFESYEVRADSIDAFSFSLKPCKRSLESPKIIDARELLSGFVTAPQVFCSNRHNILYVRSFKNGFVLSHLK |
3VTX Chain:A ((10-175)) | --------------------------DIGDKKRTKGDFDGAIRAYKKV-LKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS------------------------------AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYK---LGLVYDSMG---------EHDKAIEAYEK--------TISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELALVPR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VTX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 4651 for 1285 contacts (3.6/contact) +
2D Compatibility (PS) -17522 + (NN) -6303 + (LL) 21356
1D Compatibility (HY) 3200 + (ID) 1000
Total energy: 4382.0 ( 3.41 by residue)
QMean score : 0.493
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