Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKMHQIPTPTMSQVIMLNDSITTAEFMVSALRDFFDKPLEEAQKLMLSIHRDGDGVCGVYPYEIAIYKAVCVRDKA-RARFPLRLMVQEVK
3DNJ Chain:B ((5-84))
---------SLYRVLILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEKD-
General information:
TITO was launched using:
RESULT:
Template:
3DNJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52649 for 553 contacts (-95.2/contact) +
2D Compatibility (PS) -8958 + (NN) -7952 + (LL) 812
1D Compatibility (HY) -7600 + (ID) 1700
Total energy: -78047.0 ( -141.13 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_3DNJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DNJ-query.scw
PDB file :
Tito_Scwrl_3DNJ.pdb
: