Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNKWIKGAVVFVGGFATITTFSLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKAALKALNSKEMNYSKEETFTSPPMDPKTTPPKKDFSPKQLDLLASRITPFKQSPKNYEENLIFPVDNPNGIDSFTNLKEKDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQ------RYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
3PTM Chain:A ((102-167))-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDAYRFSISWTRIL-PNGSLRGGVNKEG--IKYYNNLINELLSKGVQPFITLFHWDSPQALEDKYNGFLSPNIINDFKDYAEICFKEFGDRVKNWITFNEPWTFCSNGYATGLFAPGRCSPWEKGNCSVGDSGREPYTACHHQLLAHAETVRLYK


General information:
TITO was launched using:
RESULT:

Template: 3PTM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22503 for 314 contacts (-71.7/contact) +
2D Compatibility (PS) -6077 + (NN) 1218 + (LL) 12524
1D Compatibility (HY) -3600 + (ID) 1200
Total energy: -19638.0 ( -62.54 by residue)
QMean score : 0.094

(partial model without unconserved sides chains):
PDB file : Tito_3PTM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3PTM-query.scw
PDB file : Tito_Scwrl_3PTM.pdb: