Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDSVTLACGNGGKETNALIERVFMPYLKEW-IVAFDEDA-PKFEASGEYCVSTDSFVITPLIFNGGDIGKLCVCGSANDVSVQGGEPLYLNMGFILEEGLEIPLLKQILQSIQKELFKANLKLLSLDTKVVPKGSVDKLFINTTCIGKIIK-PGISSRHLQQGQAIILSDTIANHGASLFATRHEIKLKTNLQSDCQLLYPLLKPLFLSDLKIDALRDATRGGLASVLNEWANSSRVKIVIEEEKIPLKEETKGICEILGLEPYALANEGVFVLALNQKDAPKALEILKSNEKAKNACVIGGVFENPYPSVVLKNAWGFERILEMPEGELLPRIC |
3VTI Chain:C ((2-305)) | ----------------ALIEEVFADAFDNEYIRAMEDAALLF----GNITLTTDSFTVKPLFFPGGDIGKLAVCGTVNDASMRGAKPLFLTAAFIIEEGFPVEDLKKIVKSMAEAAKEAGVKIVAGDTKVVEKGSVDRIFINTSGIGVLYEGANVSIKNAKPGDIVLISGTIGDHGMAVMSAREELQFDTPIFSDVAPLNGLIEKLMTLGEAIKVLRDPTRGGVAEVLYEISKMSGVGIKIYEEKLPVKESVKSACEFMGIDFLHLANEGKVVVVVERDYAEKALEIMKSHEYGKDAEIIGEVN-DSKL-VTINTIYGTSRIVDRP--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VTI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -190336 for 2626 contacts (-72.5/contact) +
2D Compatibility (PS) -31693 + (NN) -6500 + (LL) 1304
1D Compatibility (HY) -25200 + (ID) 6350
Total energy: -258775.0 ( -98.54 by residue)
QMean score : 0.415
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