Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDKGKSVKSTKKSVGMPPKTPKTDNNANSHVDNEFLILQVNDAVFPIGSYTHSFGLETYIQQKKVTNKESALEYLKANLSSQFLYTEMLSLKLTYES-TLQQDLKKILGIEEVIMLSTSPMELRLANQKLGNRFIKTLQAMNELDMGAFFNAYAQTTKDPTHATSYGVFAASLNMELKKALRHYLYAQTSNMVINCVKSVPLSQNDGQKILLSLQSPFNQLIEKTLELDESHLCAASVQNDIKAMQHESLYSRLYMS |
1VF5 Chain:F ((1-33)) | ------------------------------------------------------------------------------MTEEMLYAALLSFGLIFVGWGLGVLLLKIQGAE-------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VF5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -17 for 122 contacts (-0.1/contact) +
2D Compatibility (PS) -3404 + (NN) -2689 + (LL) 15416
1D Compatibility (HY) -4000 + (ID) 550
Total energy: 4756.0 ( 38.98 by residue)
QMean score : 0.304
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