Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---MLIHICCSVDNLYFLKKAKEAFAGEKIVGFFY----NPNIHPYSEYLLRLEDVKRTCEMLGIELLEGDYELEKFLDKAKGKELLGEKSERCFECFDLRLEASALKAFELGEEKFTTTLLTSPKKDPNQLIAKGQHIAQRHNLEFVVFRNDNFEHFKSELDLNLQA-LARENELYRQNYCGCQFALKIQKESQNRSPFELY----SPLKRQILPASIEERTQVFRELDAAKKDANKPFLAQKTIATYRLLN--GGVWLSKNSNPLDCCILARS---KSKAKVRINDLRWVFSQRLSA-LVGYSQRDETLFLTLEGLNTLMAKNYDNLKELNLNPLSYEEELSLRALVSGSESINPIIVLEERTEKTLFVEIKSIFQEEKVFYLL------------------- |
| 2DER Chain:A ((17-380)) | AKKVIVGMSGGVDSSVSAWLLQQQ--GYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVN--------------------------FAAEYWDNVFELFLAEYKA---------GRTPNPDILCNKEI--------------KFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVKFREFLGRYLPAQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQ------QLHWVDREPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNGEVCLGGGIIEQRLPLPV |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2DER.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -15731 for 2316 contacts (-6.8/contact) +
2D Compatibility (PS) -32459 + (NN) -3598 + (LL) 4264
1D Compatibility (HY) -6000 + (ID) 2500
Total energy: -56024.0 ( -24.19 by residue)
QMean score : 0.188
|
|
|