Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNGSNHMKNKTLVISGATRGIGKAILYRFAQSGVNIAFTYNKNVEEANKIIEDVEQKYSIKAKAYPLNVLEPEQYTELFKQVDADFDRVDFFISNAIIYGRSVVGGFAPFMRLKPKGLNNIYTATVLAFVVGAQEAAKRMQKIGGGAIVSLSSTGNLVYMPNYAGHGNSKNAVETMVKYAAVDLGEFNIRVNAVSGGPIDTDALKAFPDYVEIKEKVEEQSPLKRMGNPNDLAGAAYFLCDETQSGWLTGQTIVVDGGTTFK
3OIC Chain:D ((4-248))
--------NKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIE-KLGVKVLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNA------ASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQNTPAGRMVEIKDMVDTVEFLVS-SKADMIRGQTIIVDGGRSLL
General information:
TITO was launched using:
RESULT:
Template:
3OIC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128793 for 2104 contacts (-61.2/contact) +
2D Compatibility (PS) -27081 + (NN) -12422 + (LL) 788
1D Compatibility (HY) -16400 + (ID) 4900
Total energy: -188808.0 ( -89.74 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_3OIC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OIC-query.scw
PDB file :
Tito_Scwrl_3OIC.pdb
: