Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLKRAKTKAQQIKELLLKHYPNQTTELRH-----------KNPYELLVATILSAQCTDARVNQITPKLFEKYPSVNDLALASLEEVKEIIQSVSYSNNKSKHLISMGAKVVKDFKGVIPSTQKELMS-LDGVGQKTANVVLSVCFDANYIAVDTHVFRTTHRLGLSNAN-----TPIKTEEELSDLF-KDNLSKLHHALILFGRYTCKAKNPLCDACFLKEFCVSKASFKA
3N5N Chain:X ((13-234))
-------AEVTAFRGSLLSWYDQEKRDLPWRRRAEDEMDLDRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWPTLQDLASASLEEVNQLWAGLGYYS-RGRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRAIGADPSSTLVSQQLWGLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSQCPVESLCRARQRVEQ
General information:
TITO was launched using:
RESULT:
Template:
3N5N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114528 for 1586 contacts (-72.2/contact) +
2D Compatibility (PS) -21640 + (NN) -10269 + (LL) 648
1D Compatibility (HY) -11600 + (ID) 2600
Total energy: -159989.0 ( -100.88 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_3N5N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N5N-query.scw
PDB file :
Tito_Scwrl_3N5N.pdb
: