Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKKCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGTNKE-NALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIGNEPFAVILADDLCISHEYPSVLKQMTSLYQKYQCSIVAIEEVVLEEVSKYGVIRGEWLEERVYEIKDMVEKPSQEDAPSNLAVIGRYILTPDIFDILRETKPGKNNEIQITDALLTQAKRKRIIAYQFKGKRYDCGSVEGYIEASNAYYKKRL
2UX8 Chain:H ((14-281))
-LRKAVFPVAGLGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYELEATMAARGKSLDVLDGTR--LKPGNIAYVRQQEPMGLGHAVWCARDIVGDEPFAVLLPDDFMFGQ--PGCLKQMVDAYNKVGGNLICAE---------------------LTEVKGL--------------VIGRYILQPEVMRILEN---------QLTDAMQRMIGDQPFHGVTFQGTRYDCGDKAGFIQANLAVALSRP
General information:
TITO was launched using:
RESULT:
Template:
2UX8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -175690 for 1755 contacts (-100.1/contact) +
2D Compatibility (PS) -23804 + (NN) -860 + (LL) 3188
1D Compatibility (HY) -22000 + (ID) 5250
Total energy: -224416.0 ( -127.87 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_2UX8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2UX8-query.scw
PDB file :
Tito_Scwrl_2UX8.pdb
: