Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFNFFKKIVNKIKGEEVKEKKRESVPKEELEEILIGFDIQYDLIESLLKHLGDLITPKQLEVALLRFVRGESYYDKTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKLNVQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIAHTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLVDAVFVEQ
2CNW Chain:E ((43-283))
-----------------------------------------DLKEAVKEKLVGMLEPDERRATLRKL-----GFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALLE------
General information:
TITO was launched using:
RESULT:
Template:
2CNW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150214 for 2015 contacts (-74.5/contact) +
2D Compatibility (PS) -26275 + (NN) -14861 + (LL) 4672
1D Compatibility (HY) -18400 + (ID) 5300
Total energy: -210378.0 ( -104.41 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_2CNW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CNW-query.scw
PDB file :
Tito_Scwrl_2CNW.pdb
: