Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRFLNNKHREKGLKAEEEACGFLKTLGFEMIERNFFSQFGEIDIIALKKGVLHFIEVKSGENFDPIYAITPSKLKKMIKTIRCYLSQKDPNSDFCIDALIVKNGKFELLENITF
1GEF Chain:A ((2-72))
--------YRKGAQAERELIKLLEKHGFAVVRSA---GSKKVDLVAGNGKKYLCIEVKVTKKD--HLYVGKRDMGRLIEFSRRFGGIPVLAVKFLNVGWRFIEVSPKIEKFVFT
General information:
TITO was launched using:
RESULT:
Template:
1GEF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21895 for 397 contacts (-55.2/contact) +
2D Compatibility (PS) -7884 + (NN) -3946 + (LL) 584
1D Compatibility (HY) -4000 + (ID) 800
Total energy: -37941.0 ( -95.57 by residue)
QMean score : 0.325
(partial model without unconserved sides chains):
PDB file :
Tito_1GEF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GEF-query.scw
PDB file :
Tito_Scwrl_1GEF.pdb
: