Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTAALLQTGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKK--------LADKIMVDLIGFFIQDENRPARNEVFLALESLGFKSAEINPVLKTL---KPHLSIEAAIKEALQQLRS
2H5X Chain:D ((1-192))
MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKVG-------------AVRSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGK
General information:
TITO was launched using:
RESULT:
Template:
2H5X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123835 for 1168 contacts (-106.0/contact) +
2D Compatibility (PS) -18208 + (NN) -4265 + (LL) 960
1D Compatibility (HY) -8000 + (ID) 2900
Total energy: -156248.0 ( -133.77 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_2H5X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H5X-query.scw
PDB file :
Tito_Scwrl_2H5X.pdb
: