Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MCGVL-SLQARLSFENC----------SKPLDCSL-FATTCTPQNPIGSCMVSSQGGVCGVLSLQARLSFENCSKPLDC-----------SLFATTCTPQNPIGSCMVSSQGGVRGVLSLQARLSFKNC-------FLVKSLKP--SQLTLMLTGFLGGFSFLTTGFW
3EBK Chain:A ((7-176))
NEDCFRHESLVPNLDYERFRGSWIIAAGTSEALTQYKCWIDRFSYDDALVSKYTDSQGK--NRTTIRGRTKFEGNKFTIDYNDKGKAFSAPYSVLATDYENYAIVEGCPAAANGH---VIYVQLRMTLRRFHPKMLQHYTLDQVNQNKKAIEEDLKHFNLKYEDLHSTCH
General information:
TITO was launched using:
RESULT:
Template:
3EBK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73859 for 870 contacts (-84.9/contact) +
2D Compatibility (PS) -13610 + (NN) -2288 + (LL) 368
1D Compatibility (HY) -6000 + (ID) 1300
Total energy: -96689.0 ( -111.14 by residue)
QMean score : 0.186
(partial model without unconserved sides chains):
PDB file :
Tito_3EBK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EBK-query.scw
PDB file :
Tito_Scwrl_3EBK.pdb
: