Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNFFDTLMGMFVEPSQKVAKSLAEHVGSFFHAQLILNTIITILFMIWAYKRVKEGDMFEFKTAMGVVVFIAFVGFINWGIKNPNDFNTYFINTIFYPSEKLAI---LIAQSLNDGLEIPTNTNLSPSEIFSIGNLASSAYAMIVNLWDNAFDGINMFNW----LTMIPKIIMFFLVILGELLFLGLLLIIVLLVTAEIFMWSALGLIVLPLGLIPQTKGMLFSYLKKLISLTLYKPCMMLVAFFNYGIIYKVNTLIPTKHEVTQGFYGNADKMANEGKIIDVFGNVLKGDWNSYIAHSSIVGFLTIIVLGSVICFFLVKRVPDFINNIFGTSGGVGAVTEMMQKIGMTIGGAVFGGSAVMVANQVKQAYQSAGGGLAGLQAGAKAFGLGAISGGASAMANHRSVKAGVKHFVASVKSGFGFDNDKNNK-- |
4O5J Chain:A ((27-400)) | LKNLNEKYEQLSQYLNQVA-SLKQSIQNANNIELVNSSLNYLKSFTNNNYNSTTQSPIFNAVQAVITSVLGFWSLY------AGNYFTFFVGKKVDSGQPASVQGNPPFKTIIENCSGIENCAMDQTTYDKMKKLAEDLQAAQTN---SATKGNNLCALSGCAATSNPP-----NSTVSNALNLAQQLMDLIANTKTAMMWKNI-----VISGVSNTSGAITS--------TNY--------PTQYAVFNNIKAMIPILQQAVTLSQSNHTLSAS-----------LQAQATGSQTNPKFAKDIYTFAQNQKQVISYAQDIFNLFNSIP------AEQYKYLEKAYLKIPNA--GSTPTNPYRQVVNLNQE----VQTIKNNVSYYG-NRVDAALSVARDVYNLKSNQAEIVTAYNDAKTLSEEISKLPH |
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General information:
TITO was launched using:
| RESULT:
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Template: 4O5J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -315083 for 2865 contacts (-110.0/contact) +
2D Compatibility (PS) -36113 + (NN) 2408 + (LL) 4120
1D Compatibility (HY) -800 + (ID) 2400
Total energy: -347868.0 ( -121.42 by residue)
QMean score : ?
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