Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKTFLIALALTASLIGAENTKWDYKNKENGPHRWDKLHKDFEVCKSGKSQSPINIEHYYHTQDKADLQFKYAASKPKAVFFTHHTLKASFEPTNHINYRGHDYVLDNVHFHAPMEFLINNKTRPLSAHFVHKDAKGRLLVLAIGFEEGKENPNLDPILEGIQKKQNLKEVALDAFLPKSINYYHFNGSLTAPPCTEGVAWFVIEEPLEVSAKQLAEIKKRMKNSPNQRPVQPDYNTVIIKSSAETR
4YHA Chain:E ((8-234))
--------------------TKWDYKNKENGPHRWDKLHKDFEVCKSGKSQSPINIEHYYHTQDK--LQFKYAASKPKAVFFTHHTLKASFEPTNHINYRGHDYVLDNVHFHAPMEFLINNKTRPLSAHFVHKDAKGRLLVLAIGFEEGKENPNLDPILEGIQKKQNFKEVALDAFLPKSINYYHFNGSLTAPPCTEGVAWFVIEEPLEVSAKQLAEIKKRMKNSPNQRPVQPDYNTVIIKSSAETR
General information:
TITO was launched using:
RESULT:
Template:
4YHA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93214 for 1792 contacts (-52.0/contact) +
2D Compatibility (PS) -23985 + (NN) -11130 + (LL) 2152
1D Compatibility (HY) -27600 + (ID) 11200
Total energy: -164977.0 ( -92.06 by residue)
QMean score : 0.467
(partial model without unconserved sides chains):
PDB file :
Tito_4YHA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YHA-query.scw
PDB file :
Tito_Scwrl_4YHA.pdb
: