Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVVGEIKLQIPAGKANPSPPVGPALGQRGVNIMEFCKAFNERTKDMGSFNIPVIITVYQDKSFTFITKKPPVTDLIKKASGVEKGSDNPLKNKIAKLTHKQVEEIAQLKMEDLNTSTMEAAKKIVMGSARSMGVEVVD
3CJQ Chain:H ((1-138))
--KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVAAFNAATANMGDAIVPVEITIYADRSFTFVTKTPPASYLIR-------------------ITWEQVLEIAKQKMPDLNTTDLEAAARMIAGSARSMGVEVVG
General information:
TITO was launched using:
RESULT:
Template:
3CJQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64234 for 798 contacts (-80.5/contact) +
2D Compatibility (PS) -13332 + (NN) -10554 + (LL) 860
1D Compatibility (HY) -11600 + (ID) 3800
Total energy: -102660.0 ( -128.65 by residue)
QMean score : 0.650
(partial model without unconserved sides chains):
PDB file :
Tito_3CJQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CJQ-query.scw
PDB file :
Tito_Scwrl_3CJQ.pdb
: