Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNLVILSGAGISAESGIKTFRDAGGLWEGHDIMEVASPYGWKKNPQKVLDFYNQRRRQLFEVYPNKAHKALAELEKHYQVN-IITQNVDDLHERAGSSRILHLHGELLSVRSEKDPNLVYRWE---KDLNLGDLAQDKA----QLRPDIVWFGEEVP--LLKEAVSLVKQVHLLIIIGTSLQVYPAASL-YTHANKDALIYYIDPKAKNARLPQNVQCINENAVHAMQDLMPKLIEMASQEMLK
1YC2 Chain:D ((16-244))
-KHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPRAFWEFSMEMKDKLF-AEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDC-LDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAG-----EVLPKIVEEVKRLRSE
General information:
TITO was launched using:
RESULT:
Template:
1YC2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83574 for 1737 contacts (-48.1/contact) +
2D Compatibility (PS) -22874 + (NN) -9307 + (LL) 1124
1D Compatibility (HY) -16800 + (ID) 4450
Total energy: -135881.0 ( -78.23 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_1YC2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YC2-query.scw
PDB file :
Tito_Scwrl_1YC2.pdb
: