Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKAGIIGLGLMGGSLGLALQEWGRFKSVIGYDHNALHAKLALTLGLVDE-CVEFEKI--LECDVIFLAIPVEGIIECLKKMTPI-KKSATIIDLGGAKAQILHNIPKSIRQNFIAAHPMCGTEFYGPKASVKGLYENALVILCDLEDSGTEQVEIAKEIFLGIKARLIKMKSNEHDTHVAYISHLPHVLSYALANSVLKQNDPEM-ILSLAGGGFRDMSRLSKSSPLMWKDIFKQNRDNVLEAIEKCEKEIAQAKAWIENNDYESLAEWMAQANKLQEFM
3GGO Chain:D ((38-306))
----IVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGGGFKDFTRIAKSDPIMWRDIFLENKENVMKAIEGFEKSLNHLKELIVREAEEELVEYLKEVKIKRM--
General information:
TITO was launched using:
RESULT:
Template:
3GGO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -176887 for 1998 contacts (-88.5/contact) +
2D Compatibility (PS) -28562 + (NN) -10030 + (LL) 228
1D Compatibility (HY) -22000 + (ID) 4300
Total energy: -241551.0 ( -120.90 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_3GGO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GGO-query.scw
PDB file :
Tito_Scwrl_3GGO.pdb
: