Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LYQMKNKLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERNELWIPHYENPV--SWP---------VGGELKPDGEHWTFTAEAIN-----------IATTFLKSEGIELTPVKMIIETELIDQSGAKYGLGSSAAATVAVINALMTKFYP---------------EISMLKKFKLAALSHLVVQGNGSCGDIASCMYGGWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVP-TFSVGWTGTPVSTGKLVSQIHAFKQEDSKNYQHFLTRNNEIMKQIIQA-------FHTKDEELLYSAIKENRRILQELGTKAGVNIETSLLKELADSAENMGGAGKSSGSGGGDCGIAFSKTKELA---EKLVNEWEKLGIKHLPFHTGRVQITE |
| 1KVK Chain:A ((1-374)) | --MLSEVLLVSAPGKVILHGEHAVVH-GKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVATLQLLDT-----EKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQ-RTLPSLDIMVWSELPP----GAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSVSTWGGALRYQQGKM-------------------------SSLKRLPALQILLTNTKVPRSTKALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLNALGV------GHASLDQLCQVTAAHGLHSKLTGAGGGGCGITLLKPGLERAKVEAAKQALTGCGFDCWETSIGA----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KVK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -120337 for 2509 contacts (-48.0/contact) +
2D Compatibility (PS) -33404 + (NN) -13395 + (LL) 3920
1D Compatibility (HY) -10400 + (ID) 3650
Total energy: -177266.0 ( -70.65 by residue)
QMean score : 0.466
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