Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceVSKVLKSLLLTALLGVTGLISGCGDLTVLNPKGPVAKGQSDLIIYSIIFMLVIVLTIFVLFTIMLVKYRERKDISNYEPDMHGSKKLEIFWTLIPVAIVIALAIPTVKTIYAGEEAPKVTSHKDPIIIYATSADWKWIFSYPDESI--------------------------------------ETVNYVNIPTDRPVLFKLTSADTMTSFWVPQLGGQKYAMSGMTMNLYLQADEVGTYKGRNANFNGEGFADQRFDVVAQSEKDFKKWAKETKASSPVITQDIYDRLLIPGSSKKKTYSGTHLAFVDVAADPEYVFYAYKRFGYEMTNPHNPNTKSTISDEPMLPVRPVTVTNPQFERHDMKPQIIKNGEGYHEDKHREDEMKKMEEDIQTNEFNKKESDDAGK
2GSM Chain:B ((15-257))------------------------GTGFQPSASPVATQIHWLDGFILVIIAAITIFVTLLILYAVWRFHEKRNK--VPARFTHNSPLEIAWTIVPIVILVAIGAFSLPVLFNQQEIP-----EADVTVKVTGYQWYWGYEYPDEEISFESYMIGSPATGGDNRMSPEVEQQLIEAGYSRDEFLLATDTAMVVPVNKTVVVQVTGADVIHSWTVPAFGVKQDAVPGRLAQLWFRAEREGIFFGQCSELCGISHAYMPITVKVVSEEAYAAWLEQH------------------------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 2GSM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60701 for 1354 contacts (-44.8/contact) +
2D Compatibility (PS) -22094 + (NN) -7858 + (LL) 8332
1D Compatibility (HY) -14400 + (ID) 2350
Total energy: -99071.0 ( -73.17 by residue)
QMean score : 0.331

(partial model without unconserved sides chains):
PDB file : Tito_2GSM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2GSM-query.scw
PDB file : Tito_Scwrl_2GSM.pdb: