Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSRKKGIILVLSVILIFSIGLLVNNLMTNNKDTAKPKKKTVAAVKKKKETPPKPKEPFNIDFTGDIMFDWDLRPVL-AEKGMDYPFNNVREELKSSDYTFVDLETAITTRTKKVPYQEF-WI------------KSDPSSLTALKNAGVDMVNISNNHILDYYEDGLLDTTAALRANNLAYVGAGKNEDE---AYQL-KVAD-----I----KGNKVGFMSFCHFFPNTGWIADEDTPGVTNGYDLNLVEEKIKEERAKNKDIDYMVVYFHWGVEKTNTPVDYQTQYVKKL-VDDNLVDAIVASHPHWLQGFEVYKDVPIAYSLGNFLFPDYVSGHSAETGIYKLNFDQGKVTAHFDPGIISGNQINMLEGSSKTAQLNYLQSISPNATINSNGDISAK |
| 3GVE Chain:A ((8-261)) | ------------------------------------------------------PQVHLSILATTDIHANMMDYDYYSDKETADFGLARTAQLIQKHRE--QNPNTLLVDNGDLIQGNPLGEYAVKYQKDDIISGTKTHPIISVMNALKYDAGTLG-NHEFNYGLDFLDGTIK---GADFPIVNANVKTTSGENRYTPYVINEKTLIDENGNEQKVKVGYIGFVPPQ-IMTWDKKNLEGQVQVQDIVESANETIPK-M-KAEGADVIIALAHTGIEKQAQSSGAENAVFDLATKTKG-IDAIISGHQHGLFPSAEYAG---------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GVE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -34449 for 1825 contacts (-18.9/contact) +
2D Compatibility (PS) -24061 + (NN) -7923 + (LL) 8136
1D Compatibility (HY) -4400 + (ID) 1900
Total energy: -64597.0 ( -35.40 by residue)
QMean score : 0.295
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