Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LEKKKKFRLFDAVLMAVCVVLVVESAAPAAAIGSSQFFWWIALLILFFLPYGLVSAELGTTYDDEGGIYDWVKRAFGRKWGARVAWLYWINYPIWMASLAVLFVEVITQIFPVSFGTPVSILIQLIFVWIVVIVSCYPVSDSKWILNIAAFCKVA-IMLCLGVLGIYFAITKGLANDFSGKAL---LPTFDLESLSFISVILFNFLGFEVVTTLASDMENPKKQIPQAIIYGGILIAFFYLLAAFGMGAAIPTSELSTSGGLIDSFIMLIGGVNPFVIIIGIMFMYTLVANLVSWALGVNYVAMYAAKNKDLPAVFGKTNPKNDMPTGTSILNGIVASVLIVAAPLIPNENIFWAFFALNVVALLGSYILMFPAFLKLRKLDPDRERPFKVPGGKILLYLMTFVPMILLIITLIFSAVPLNGSSAELNEKIPILIGTIVAVIVGEICIWLAGKRKDKGEIKNEND |
4XNV Chain:A ((38-382)) | ------------------------SFKCALTKTGFQFYYLPAVYILVFIIGFLGNSVAIWMFVFHMKPWS-----------------------------------------GISVYMFNLALADFLYVLTLPALIFYYFNKTDWIFG-DAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYPKSLGRLKKKNAICISVLVWLIVVVAISPILFY-SGTGVRKNKTITCYDTTSDEYLRSYFIYSMCTTVAM---------------------FCVPLVLILGCYGLIVRALIYKMK-KYTCTVCGYIYNPE----DGDPDNGVNPGTDFKDIVCPLCGVGKDQFEEVEEPLRRKSIYLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQT-------------PAMCAFNDRVYATYQVTRGLASLNSCV------------NPILYFLAGDTFRRR------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XNV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -209245 for 2502 contacts (-83.6/contact) +
2D Compatibility (PS) -33893 + (NN) -6793 + (LL) 12032
1D Compatibility (HY) -26400 + (ID) 2600
Total energy: -266899.0 ( -106.67 by residue)
QMean score : 0.142
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