Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARKYEIMYIIRPNIEEDEKKAVVERFDGILTEN-GAEIIESKEWGKRRLAYEINDYRDGFYHIVKLNADKADSINEFDRLAKISDDIIRHMVIKEEA----------
1VMB Chain:A ((17-123))
KERIYESMFIIAPNVPEEERENLVERVKKIIEERVKGKIDKVERMGMRKFAYEIKKFNEGDYTVIYFRCD-GQNLQELENFYRVTPEIIRWQTFRRFDLEKKERKAQR
General information:
TITO was launched using:
RESULT:
Template:
1VMB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46399 for 647 contacts (-71.7/contact) +
2D Compatibility (PS) -10210 + (NN) -2859 + (LL) 64
1D Compatibility (HY) -8800 + (ID) 1450
Total energy: -69654.0 ( -107.66 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_1VMB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VMB-query.scw
PDB file :
Tito_Scwrl_1VMB.pdb
: